NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209033_1002386

Scaffold Ga0209033_1002386


Overview

Basic Information
Taxon OID3300027697 Open in IMG/M
Scaffold IDGa0209033_1002386 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10385
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (19.35%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009960Metagenome310Y
F017485Metagenome240Y
F021979Metagenome216Y
F023789Metagenome / Metatranscriptome208Y
F067472Metagenome / Metatranscriptome125Y
F067745Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0209033_100238610F067472N/AMLTIDNIQNIEGKEFQLSSGQKYVIGICRAYYDHYSFGVFPLAVNGVAIINDGIIYKLHRTKKSIRGYKLVAPKMSWQPYVKPENLTLKNFILELHIQTGLLNANNRKH
Ga0209033_100238611F009960GAGMLTIENINKINGYALEVKGKGYYFKGWDNTTNDVATFALAGVSVSNPMIRITLHKKGRMSVDYIRNTSCYVYGVAVDGLTFYYTKERLNTPEKFRDAIEQILNAI
Ga0209033_100238614F067745N/AMSINISTDSRHLTMKGNGKVQIKTSIQIYGTGTKMPVTIEADFTDIPHHLHQIYYQSLISQYNTSVNVYNNTKDEEPKTIREKKSEWRLNRIVDIISKAISK
Ga0209033_10023864F023789N/AMDTNHTHNLTGRERIELQTKIQKLQWLLKECIGLEEYELCSQIRNIIQKKYELLQTNQSNNITE
Ga0209033_10023868F017485N/AMNNKLKRKDILEGITFILMIVATIGMYCLLYEVKELRELTKSATNFRTIRK
Ga0209033_10023869F021979GGAMLTIENINILNSKFAGTAEWQIGEMFIGEQNYIFVIHKRVGEWIIGDVKHSELTIRLHRVKVIDRYVMETGLVKQNYHSRSAHSIDSMRTITDFTLCLDRHIKNIVKQ
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