Scaffold Ga0209170_1028234

Overview

Basic Information

• Taxon OID: 3300027694
• Scaffold ID: Ga0209170_1028234
• Source Dataset Name: Active sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB14_bulk (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2123
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Active Sludge And Wastewater Microbial Communities From Klosterneuburg, Austria

Source Dataset Sampling Location

• Location Name: Austria: Klosterneuburg
• Coordinates
  • Lat. (^o): 48.3
  • Long. (^o): 16.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F093751	Metagenome	106	N
F095393	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209170_10282342	F093751	AGGAG	MSTVREMVESLGSQPYVAIKLGVSSRTIRNWIASNQIGRASRLDFLKMLKQAGYKNVTLKQLNELEPTKQVAKC
Ga0209170_10282343	F095393	GGAG	MNHQAEYESIKKQIAELEQSLKNRCIECSNFNKKKNECIKHGCIPKDVVFEKNDCPDWDWLPFKYVEL