Scaffold Ga0209704_1022182

Overview

Basic Information

• Taxon OID: 3300027693
• Scaffold ID: Ga0209704_1022182
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1626
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010764	Metagenome / Metatranscriptome	299	Y
F037700	Metagenome / Metatranscriptome	167	Y
F071163	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209704_10221823	F071163	N/A	MTKTQSALERVIIELDSWCDNWTPTSYNDPRISLRQIADRARNVLEEEKNDLRSSNLG
Ga0209704_10221825	F037700	AGGAG	MKKYRIKKETYGNTTKYFPQERWFFRWFNIFAFDVYFDGGYDTLEKAQKNLCIYCRGTMVEYLNFDPNEDCK
Ga0209704_10221827	F010764	GGAG	MIEVKKSYVVELTEQQAKELYELLRTEKNNGGLTYFKEVVLVYDELKNLFDSGIR