Scaffold Ga0209704_1000121

Overview

Basic Information

• Taxon OID: 3300027693
• Scaffold ID: Ga0209704_1000121
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14054
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (30.00%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F001338	Metagenome / Metatranscriptome	719	Y
F001923	Metagenome / Metatranscriptome	617	Y
F002038	Metagenome / Metatranscriptome	600	Y
F002413	Metagenome / Metatranscriptome	561	Y
F003583	Metagenome / Metatranscriptome	478	Y
F003714	Metagenome / Metatranscriptome	472	Y
F004790	Metagenome / Metatranscriptome	423	Y
F006659	Metagenome / Metatranscriptome	367	Y
F024551	Metagenome	205	Y
F026860	Metagenome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209704_100012111	F002038	N/A	MADIPKGIEKIATTVPKQYALLLFLDGFPYVEMTARKSADFMTDLNSWKRKTYPSLARSDVRYFTLAPNGEIKELTFTPVRQ
Ga0209704_100012114	F006659	N/A	MRTKSGPTYLLTLSPMKKDNKPSPDYRVIADSSYIVLPDQKVARLLTPTVRGGVTYYNLFVPGYTRMSLADIEATIKAGEVTKAEQASK
Ga0209704_100012118	F000957	GGAGG	MSSFKHLDGMLGLLSELYEINCRVECGDICSAKTAIQSKRMEKLLNHYHEALSEDGASKISLQAYAAAGGWVGITYSYEVDGFEVSGSQVPRRV
Ga0209704_100012119	F024551	N/A	MTIIRPDSLPRFWWLFPWSIARQLHKNAVALRELADNQSTTITNQANILGRYMDQNRELKAEVTRLAHSREHWIAKHDRAYEVAMHNEKVIREMEERRR
Ga0209704_10001212	F026860	GAG	MRRFDPARLIEALRQENNIPPPKGWFTVEQIRQELQLAHARNASSRACDLARRGLLERQPHQFKAKTGQCHMAYVYRPLPPYRSVKEAAERLSSHNQDTVPKGWARIVDLAVELRVSDVAVRGRVSRAGLKPRYFKTSRGIIGLHRNAYYLKSAVLALYR
Ga0209704_100012121	F003714	N/A	MPNANHPYTETLTFAGRVIPLKRPMAVYAANRLQAILPQIAALNAAGKSQADAAAALDTTVCTLRQWLDITGTQWVNLNRRGPYRRQK
Ga0209704_100012124	F003583	N/A	MGKPKPSLPSASGNLLLAVTLLTAFAGVSALSSAYIAGYVLDQLQSTDALVMIVTDAGLKSDSADLERNMSTATLALKSVRDLGWALAVGCLGVGVAVFLRSRRQNAS
Ga0209704_100012125	F001923	N/A	VSPPPPISPEDIPKELKDGIVASVLGGLAMTARLLLSTEPVSLGWVVRRVLAAAITAALVGYGIQDHIQSPGLRMGVVGAAGYAAPECLDYLMRYIKARGEKEVAAVVGKPKTNGKAKAKPAKRKR
Ga0209704_10001215	F004790	GGAG	MNPETLAWARKVGITPDRLAFLLACPKYTRTGRNDKPAYIKAENPNHHLQKLGDCYWFRLRRRGKDIVENIASDLETARKRRDEMLAAFDAGKPIPYINVR
Ga0209704_10001216	F002413	N/A	MAPPTLVLVSGYARAGKDTLASGILEWSQRPAEHINFADALKEAANHYMDYLGLDGDFFKEDFKVDNRDFLVHAGKFARRMDRDVFARHFANWCPVMKHHDQPSPETVVCSDWRYINELRVCQDILWEKGWKVRTVYVATAGVGPANDEELDSIAEIRASHLFDQEYIFRPNARNQIMTEGRNLARQWRL
Ga0209704_10001217	F001338	N/A	MTTENDRPPLTSISANGTYKLKLIKPKFEKVKQWEDGTTSCRLFFVDDKGFCLSKNFSSKYGKALAMLVGKFSGKFTNEIRLDATPAEYMQYLEPACGQTILVGVEVEPNGEWQGKPQYKYKMTYPKGSQKPTVQDNPPPEGVPF