Scaffold Ga0209704

Basic Information
Taxon OID	3300027693 Open in IMG/M
Scaffold ID	Ga0209704_1000050 Open in IMG/M
Source Dataset Name	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209704_1000050 Open in IMG/M

Source Dataset Name

Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19451
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (74.07%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

19451

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (74.07%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Name	near Jamestown, North Dakota
Coordinates	Lat. (^o)	47.0956	Long. (^o)	-99.1001	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

near Jamestown, North Dakota

Coordinates

Lat. (^o)

47.0956

Long. (^o)

-99.1001

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007170	Metagenome / Metatranscriptome	356	N
F024791	Metagenome / Metatranscriptome	204	N
F049000	Metagenome	147	Y
F053298	Metagenome / Metatranscriptome	141	Y
F058132	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209704_100005011	F053298	AGAAG	MCTACRLAEWRHFQTLEINKRNRQNALDANRAAYLGRKRAIRDSIRAGVVTAVTVLLFLALVSATRDAIRYEYETKPAMLKANGVK
Ga0209704_100005014	F049000	AGGAG	MTVYADDWLEVYIPSELLDEVEYYSDGGHGYKCGSVFAMKHEETADYIMTNRESQLAQNFVDEYGIDLNDRAEVIKHIDHLNVLMGEDI
Ga0209704_100005023	F058132	N/A	MALSNLKQIPKDADKGTLVVDLSDIAGDGAELRFREPKAADLFPDSKELQSLRVAFAEFPEAMLYQIYLLGRCYVPDPTDGAEESPLRAFGNLARTSKQTFFRILGEFISWYPTDDLQGRVKDAKNGSEV
Ga0209704_100005024	F024791	AGGAG	MPFSRTSALIGENCVVTVAFGGYQDGSPSTFTAETYTCIARSVRFSTSVNSVDVSALCDAQNKAQVTKANGSVEVEFLVDSVVGPIFYGKDGYYCQIVVTPGSLTAKTFVGVVTATGLSVANEEAVTESATVTLGANGVSTAWS
Ga0209704_100005025	F007170	GGTGG	MAFEPAVIEQWIYETLTGDTTLMGLLAPDNKPSGFQMSVYNTIAPQVDPISRKQPITPYIVFDRAGNGGQDQDVLCGSRVFTYPTYRITVWDTASGAVSMSQSAAIMSRIDTLLDNQHVSSTSPRFYCRRESTAQTFGVESGGRTDFGVTAVYRMVTQQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209704_1000050

Overview

Ecosystem & Geography

Associated Families

Sequences