Scaffold Ga0209704_1000045

Overview

Basic Information

• Taxon OID: 3300027693
• Scaffold ID: Ga0209704_1000045
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20119
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (18.03%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013631	Metagenome / Metatranscriptome	269	Y
F027828	Metagenome / Metatranscriptome	193	Y
F031454	Metagenome / Metatranscriptome	182	Y
F036668	Metagenome / Metatranscriptome	169	Y
F048940	Metagenome / Metatranscriptome	147	Y
F058096	Metagenome / Metatranscriptome	135	Y
F073458	Metagenome / Metatranscriptome	120	Y
F093764	Metagenome / Metatranscriptome	106	Y
F101038	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209704_100004512	F073458	N/A	MSDKLIALAAEIVDTNPAGAQLIVNLTNAETGADIIEALDNYDSAVLENHTEPVDSEDDGYVSLTDSEGVVSTL
Ga0209704_100004513	F093764	N/A	MARRNKSASRQMVESLKEQLTEYFRENVFDDYDYEDLTGSELFEALVETFKELENDLKEEMKPIQYVLNKIDPEDSQSQVLNG
Ga0209704_100004523	F013631	N/A	MPYNTGTQAKETMTVLDVFHYTTSRWDWHEGNVNQMWIQEIEQSEDYYSYVAVAYNPRKDATMVMSEPRCYADTLNWVRKFCGSFCILPQYCY
Ga0209704_100004524	F036668	N/A	MTETDLLSVREQIQEDLISLLESRSGEIDYLNEVQDLACQIVVDNFSQLLS
Ga0209704_100004530	F027828	N/A	MDAEIILTSLLPILIGFNFVKMMELTTETMIDTVLTMEEILTEKQLLSRGTLFTFYKEFQLELYNYPQEDTLFTKTQRELFDIFDIK
Ga0209704_100004535	F101038	N/A	MELTNSFPPVDSTINKLKQFDYIQFGADAIKFAATVSAIVVAAVSYGWTAFQLWWDDNGEATQVNFIRFVVNVIDFVAAIVIAIPKIYRWVKLNTNRLVDSLFFQVALA
Ga0209704_100004546	F058096	N/A	MNAQLSIDECKVMWVVGALERLATLGMIGPDIPLQLSADAVEDYMEIDNHRNLLFESDFEIASIFTQIAKAECEDEPTPDDIDAIIDLILQYKNNRTEIVKFALSHQTV
Ga0209704_100004552	F048940	N/A	MTAAQRMEKQFFLQFISLINEVQGKTKLPSQIVKNRKSAWVKQVSNPKQKKDALSLV
Ga0209704_100004561	F031454	N/A	MTFMNESTLDLFCQHEDEMYADEYAMELERKAAELEITVDYYMMEFV