NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209530_1063633

Scaffold Ga0209530_1063633


Overview

Basic Information
Taxon OID3300027692 Open in IMG/M
Scaffold IDGa0209530_1063633 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1070
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025323Metagenome / Metatranscriptome202Y
F058007Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0209530_10636331F058007GGAGGVRVEVSLEAEEFVRGRGGQLWVWAAYPPMCCSGTPAYMHAATEPPRDPGGFSPAHTAGLQ
Ga0209530_10636332F025323GGAGMGFFSWFSSCGTVGEGEGEGGGGRSLIHINVADPKLSEVQRRAAEDVARVQQDDKYFHRNDGDL

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