Scaffold Ga0209530_1035665

Overview

Basic Information

• Taxon OID: 3300027692
• Scaffold ID: Ga0209530_1035665
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1476
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007126	Metagenome / Metatranscriptome	357	Y
F012935	Metagenome / Metatranscriptome	276	Y
F037832	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209530_10356651	F007126	AGGAG	MSGVINDLDALTEFRAHLMRFNHDLAENFATMRGHWRELGDVWRDDMYRLFGEALDEVTPGI
Ga0209530_10356652	F037832	GGAG	MTTQERIVEPVMAPSPTPPSVSPYLSLRQVVRPAIFAHFLLAEDQERAGHLAAECEDLLFLTRELLKAAGLSRLLGAEPAGPASAQEDGGDRQEQLLGAYAEAGLLWAKVVGSTMALAMALLDRGDWGGVRRLASFLADAGEDSTAAELKIQLGKAVWGTYHEQLQGISNAMRPAAIGEAIDALRAVLREVPEDVPDRNREVNRFLAPLAASVHALMREQEMDIPYSSRVEHIAVGGVARYPDIVKLSLDEIAAEFEASASGLVINKQENRHVRGYQRS
Ga0209530_10356653	F012935	N/A	DELDARLADSDGAVRPERFFLIAGLHRWHDLLAEGDYGRPSETSARLVRLADKGPDAGLHVVAWADGYTTAERALRRAGLAHFGLRAVLRVLSPAESDALLGVSAAASLDDDRALYRDTEWPAEQVEKFKPYSAASLSSFARTAFGSPAFGSPAFGSPA