Scaffold Ga0209485_1001756

Overview

Basic Information

• Taxon OID: 3300027691
• Scaffold ID: Ga0209485_1001756
• Source Dataset Name: Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4725
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Sorangiineae incertae sedis → Minicystis → Minicystis rosea (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location

• Location Name: USA: North Logan, Utah
• Coordinates
  • Lat. (^o): 41.7655
  • Long. (^o): -111.8143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072863	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209485_10017562	F072863	GGA	MLDDHSYATLLRPIGQMLEGLRIDSFAVRSDGNGFVVQDRTRNRAQLTPRERSFLAELHLGHTDSLDKEDALRLAAGVFEWHVTESDMERFEREGREKRRGGEQAPDSHSVSQVLRVIGTILDQKHGHMSCVSKDEQVVTLEYKLPSGRMATEEYDVPTLYDFWVRMYKKRSPRIGEARLTA