Scaffold Ga0209551_1000715

Overview

Basic Information

• Taxon OID: 3300027689
• Scaffold ID: Ga0209551_1000715
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12515
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (75.68%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F020167	Metagenome	225	Y
F020910	Metagenome / Metatranscriptome	221	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209551_100071512	F000684	AGGA	MTISGYTYQIGDLFTTSKTGITGRIADFTPITNKVTRVSLVLSNGSRRLAMVKTSK
Ga0209551_10007153	F020910	GAGG	MWSKYTFVCDPDECDALLEFTARDGFGFPLGSVEMTCPCGRKLNYISYEDAWEPILADVTKITPREVVKINTNPYN
Ga0209551_10007156	F020167	N/A	MTQTMRTIDELVNEMYMDNESHLEYMENMNGGDCDCSIHTTLNTIVKYWWDEEN