NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209553_1214417

Scaffold Ga0209553_1214417


Overview

Basic Information
Taxon OID3300027688 Open in IMG/M
Scaffold IDGa0209553_1214417 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.DN (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)619
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034566Metagenome174Y
F054581Metagenome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0209553_12144171F054581AGGAMCPHCNNKLIPLLYGFVDPKYVDMHKEGLIFLVSTTYHTKDSPTAYCKKCEMSFNTKLD
Ga0209553_12144172F034566AGGMQFALIVILCLSLLFIGGDLKQARKMTLDQSNYCIKYTSDIIATSRLDLIREQDAHSRTVDKANSVIDDIVNRYNSLVARYNKNTGGTNYDPLSIYSYRIRP

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