Scaffold Ga0209553_1000617

Overview

Basic Information

• Taxon OID: 3300027688
• Scaffold ID: Ga0209553_1000617
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.DN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18422
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (47.06%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006099	Metagenome	381	Y
F072280	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209553_100061717	F072280	N/A	LYKIEEDHRSSLYYAQYEWCITINISEAPCLRYLDSKKFEQALRNAKHWSEQDRFGENFRAWGPTKETALRETRDVLLTETEQLKTVVSFRVVSIYTNHLGLADRLINLGNDGVRLRLVRRALMDKPAGVVQLRESQYAYRTYLRERKYTKDQRDMLANFLHSRQDTLRVSPALASWANGTFIGYIRNLSYSRSYYFVDHDHPNEGTMLSLVMPGIVRKTMPIETTK
Ga0209553_10006172	F006099	AGG	VSTVAQSLKENMTSARILYLARYRVPHAIMSLQPEFANNLIGIDRTCIASPVPQEELWPVFEKYGIDTAKLDYAPDSEIYKIYPEVNNWVFEGDYRTYWLRQQAIKFAFLDYLNYDLMIMHDCDCLLIKPYEPIKNGVLNFQVLENERHSWGYYESIKNALGFDRLTPHCFISENVPVLKQDFNDLVKFLEEKHQKKWLDAMIDSCPPEATVPPWGNGELIRWFSEYEFIGNWIMSRRPITQEFQRRYHYDDMEKIGDFDPNYHTAVCDAVPDLSRSLQMDWGKKEVVNFNYYMDKIRDTLACLS