Scaffold Ga0209710_1181311

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209710_1181311

Scaffold Ga0209710_1181311

Overview

Basic Information
Taxon OID	3300027687 Open in IMG/M
Scaffold ID	Ga0209710_1181311 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	735
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	75.235	Long. (^o)	-150.0691	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009716	Metagenome / Metatranscriptome	314	Y
F071645	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209710_11813111	F071645	N/A	MKQNIMKATEKIKLIIELEVGFKQLDLEELHMIKDTLNKEIENKTKLLFRGEKLHKAILKRELKRRLAGFADDDIENGFFTP
Ga0209710_11813112	F009716	AGGAG	MNEKINNTDIPTSMKLPRDVSLSENSKHIRKEIDDWLKEGNKKTIIPTKEPGVK

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