Scaffold Ga0209710_1104706

Overview

Basic Information

• Taxon OID: 3300027687
• Scaffold ID: Ga0209710_1104706
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1109
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005832	Metagenome / Metatranscriptome	389	Y
F049035	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209710_11047062	F005832	GGAGG	MSKDGIWQDSDGMKDSEMVEQWTKTLHTVEYAVEQLKHQKTALMKKREDIVNSKENKNG
Ga0209710_11047063	F049035	AGGA	MANWNSSELQTPEPIKKIGQNAQNVINNLDILLKIVKGGAEVAKMFLLLSNPAGAIIKLAANEIIKAANDFKEIGVFYLFINPNDDGYGNQTSRELGLAIKRDGLTGLYQFKSNVMGIGPGQTATFTVGKAYQRSLDKDDLDPLYRDSNNRTKADPKFIPPIPIYDDPPRWELGGIDPSTWNGHAPITSIPLADGTFPPEMKPSKVLQIMSESFDDEGDVSTFEIQAGMKSLARKSKIFTASGAGVDKSKFNPDGVQRERLFLDEIKNVEG