Scaffold Ga0209710_1076834

Overview

Basic Information

• Taxon OID: 3300027687
• Scaffold ID: Ga0209710_1076834
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1394
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004220	Metagenome	448	Y
F026714	Metagenome	197	N
F043088	Metagenome	157	N
F043623	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209710_10768341	F004220	N/A	DRWIRVCTKDMNEGFSVFTKQTRVKEHYKKMADTGVEFYTCDDDDLDKEYGMYYGNLEFDPLDIMETNSGHTKMFHKEDGKWQQL
Ga0209710_10768342	F043623	AGG	MFKRIKKTEDSPCLKEAQAFVKGWVERVVLSTGVLLVDEEATYKQGIKKNKAASFLSTKEGYPEILGPAIFIPHEVKSEWY
Ga0209710_10768344	F026714	AGGAG	MADKYKKLTIYVSEEQEKVLKDFDIMAIRKEQFPLLHYTVGIISKRLEETHNRMITDVDPNTCDISTLHLNSQTIE
Ga0209710_10768345	F043088	AGGAG	MKRLDGIYRGYDIFEKDKVWKIELEGKTITTFNKILNVDGKASCMTEIDRIKREDYHERERNVQRVDAQVKATRDGGV