Basic Information | |
---|---|
Taxon OID | 3300027687 Open in IMG/M |
Scaffold ID | Ga0209710_1062742 Open in IMG/M |
Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1616 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Pelagivirus → Pelagibacter virus HTVC019P | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Arctic Ocean: Canada Basin | |||||||
Coordinates | Lat. (o) | 75.235 | Long. (o) | -150.0691 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001702 | Metagenome | 649 | Y |
F080517 | Metagenome | 115 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209710_10627424 | F001702 | GGA | MNKEQRQIKKRIDQAYSKLHVLSNITWTPYRDEIFDMNKKDEKRHRFNRPSSDFEASINDCAKMFTVKNIAESLLNIEKWKVKDLINIRKSALYSQSVVENYKDKILDAWKDEDLKYLANLDYIALINWQSYTEKEQRKVA |
Ga0209710_10627425 | F080517 | AGG | MTIVHEKNSTIGYDTINKCVASVRTPENTSYETMIKICIDKLINGDEVEKYKSALINMAKMMDKENI |
⦗Top⦘ |