Scaffold Ga0209710_1055322

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209710_1055322

Scaffold Ga0209710_1055322

Overview

Basic Information
Taxon OID	3300027687 Open in IMG/M
Scaffold ID	Ga0209710_1055322 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1769
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	75.235	Long. (^o)	-150.0691	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008523	Metagenome / Metatranscriptome	332	Y
F012716	Metagenome / Metatranscriptome	278	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209710_10553222	F008523	N/A	MSIKAISIKKFNEEIKSYIPFHEVSSPPSIGDVEGQSFDCGCGQSHIMNFDQHYFIADGGMFKAVFLSPACGYLNALKLKKMFSSGIENLCSTKFLNKEPDYGFESYPDIAGSINKYFGK
Ga0209710_10553223	F012716	GGA	MRIINTADEMMKAFQEDTPMPAGVMKTEGYGNLGFECGCGQWHGVNAHDVQQIASFRPVKILFKCSTHYTKVQIKGIFSQSCISEWTCKNSIAADFAKKHDL

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