Scaffold Ga0209710_1054814

Overview

Basic Information

• Taxon OID: 3300027687
• Scaffold ID: Ga0209710_1054814
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1782
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019232	Metagenome	231	Y
F044194	Metagenome	155	N
F094394	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209710_10548142	F019232	N/A	MIELSFIIGCLLIVLIGVYLMKANQLFIDNENRKYSNTINKVKPKIKNQ
Ga0209710_10548143	F044194	AGGAG	MAEQTDAHDFVQSRNKAMNFDRVQRQKKIKDNLELHQNTQNTIKGMVDKLTSLNKSADEIEVNLKKTIKDFFSQPTVK
Ga0209710_10548146	F094394	N/A	MIELLLFLFTDFDNRMGNFHTVKHKFHTYQECNDYIKEHTIEENIYTPTGQVIGLTYCKPIDTDK