Scaffold Ga0209710_1044027

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209710_1044027

Scaffold Ga0209710_1044027

Overview

Basic Information
Taxon OID	3300027687 Open in IMG/M
Scaffold ID	Ga0209710_1044027 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2073
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	75.235	Long. (^o)	-150.0691	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007119	Metagenome / Metatranscriptome	357	Y
F012719	Metagenome / Metatranscriptome	278	Y
F025717	Metagenome	200	N
F051178	Metagenome / Metatranscriptome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209710_10440271	F025717	N/A	MLKQQLEKLSFYKGVKFEVKGKQLFARSANRTMLQEQTENYFKKSRIKYSPRKKLTELEVAGSSEILVFKPLFAKGAGGVKFEHQITKDLNDWFLGADYEDLQHSDTISQLVKTLRLRQDSRYKAQGVGAANTRRPPSFTANRMTVTNNTKGKVSDVDIISGNRVLHHLSLKFSPSFYIYNATVINYFKAAQPATRKMINEFFGFDGFKMGQSFGKEFAVNTTKNPNYSAIMRRFKDILNQCLGPDIVLVLKIANNNNHIDKIVGMNHRIQVSGLNRNSYGYAEKGVRKYNFINFHAMVNGHKYEINFQFRGTTSVDTGPRYLRILFKAK
Ga0209710_10440273	F012719	AGAAG	MDKYLKWIATGFLMIGCAANSVGIYPLGPITTLIGGFCWLAVAIMWKEAALITTNLVLSAITVIGLIYTYTN
Ga0209710_10440274	F007119	N/A	MIVGTMPKFQVLKDNKIIGEFDNAMDTALCANNNEYGPGMDIFTNDKQASETWTHFDYKEDL
Ga0209710_10440275	F051178	N/A	MIKKGKCTVCKKVFTVKKGESLIGKLGIIPVDLCKTHLKKVLSYDEMNLNDCRHNA

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