Scaffold Ga0209710_1041491

Overview

Basic Information

• Taxon OID: 3300027687
• Scaffold ID: Ga0209710_1041491
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2161
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021775	Metagenome / Metatranscriptome	217	N
F038301	Metagenome / Metatranscriptome	166	N
F097368	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209710_10414911	F038301	N/A	MVTSLTIALAISLTGQVETKLCNLKCTGHTKEVIREKSLDITEDSRYRDGIESGSILLCNGEAQGFTNHNTGDRVCDGTNHEEWKKYGKIGECYVC
Ga0209710_10414917	F021775	N/A	MIITQTINNTVVDMTHVINLQSEGILTRQDVLGIIETNKQCI
Ga0209710_10414918	F097368	N/A	MNYIKTQILRDEMYSDLIQDYDTSNMSEQELSDTHDKIITTINNKL