Scaffold Ga0209710_1032250

Overview

Basic Information

• Taxon OID: 3300027687
• Scaffold ID: Ga0209710_1032250
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2566
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016292	Metagenome	248	Y
F023243	Metagenome	211	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209710_10322501	F016292	N/A	MEKRIRKIGDCYTKFGLKHTSKSQNTIPDDIRFRNYVVMTPKEKMNMPKNCSFEGGTLAHQVVQIHYTQNKTLEEALNSKEVQDRIKNYSSLDEKDQIKFNFIVENLIQTSQNHLDNINELPKQKWEAEFEYTHWDDRIKTYFLSYVDLIGETHFGDIKNVFGRATAKVDGTYSYSNPKVPVVPFHSDCLQIALYQKLLPKLKPFLTYASHSDRKIFTPENCTELRPDSLEHYYDELVLYQQCWEKKLELADGNIETLAKLCKPDFSEIRKNGFWWKG
Ga0209710_10322504	F023243	GGAG	VSPEIELDLYEMTTAAQTGLLRVTESIKQNQEWWHGYKGTLEDKISKSISGAMAEISLCKYLGVPFEFHTNVGSQPDVKYKNYKIQVRSQTVKKNNNNSLIIRPKGVKPNEIYVFILSEAPKFTIKGFINSSAVMGKEDYLTDFNLA