Scaffold Ga0209710_1017535

Overview

Basic Information

• Taxon OID: 3300027687
• Scaffold ID: Ga0209710_1017535
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3835
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003769	Metagenome / Metatranscriptome	469	Y
F011629	Metagenome / Metatranscriptome	289	N
F045552	Metagenome / Metatranscriptome	152	Y
F087017	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209710_10175352	F003769	AGG	MQTQTQQLKTITVTTSNSVESVHIDTLYTVLTNCFNKLQLVEADCTGSSYYINSANIFAQLQLLYVENADNNYVSLQSVMEVFANNITYYDESSLFTQVVENTVLQNVVLENYVYLSN
Ga0209710_10175353	F011629	N/A	MRANNMWTKLENLNTTQVKDIVKKRFGGSITKVYLNKCYSNKKEIADKRNMAFAVDGTRFANVDLVALAQEIGCKRVKLHTAYLRGFADGCWLRLQHVNYNK
Ga0209710_10175354	F045552	GAGG	MQTFTQHEKDFVVEFLADTLHGLTINNVLSRQEGNGFIRMADAQEVLGNLEMLYNKHDDEEDFVLNETNATWTFTLDDAQTALRSYDTEYRDCIVEQFEDACTDALADAEKKLLDADYATLADRINNY
Ga0209710_10175355	F087017	AGG	MLKITNTTIEKDGTFGTNTNYTVDGSVALALDSIWDYDGKVDVDVTGIQVYTHYDDDGVTESNVDVNVTHNADWNIYTDSGFESAISNLLGFDVTFTEQGMQDDGYASMEV