Basic Information | |
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Taxon OID | 3300027687 Open in IMG/M |
Scaffold ID | Ga0209710_1016769 Open in IMG/M |
Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3945 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (50.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Arctic Ocean: Canada Basin | |||||||
Coordinates | Lat. (o) | 75.235 | Long. (o) | -150.0691 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F017161 | Metagenome / Metatranscriptome | 242 | Y |
F020035 | Metagenome | 226 | N |
F054161 | Metagenome | 140 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209710_101676910 | F054161 | N/A | MLLKIGKEWLHKKNGGCFSATHMSPSQINKPIDQWLYDYCVLDAEDRKKLPANMPMKFGSIIGTSLQDIIVHKLTIKEVMGGKK |
Ga0209710_101676911 | F020035 | N/A | MKIKLEPFEVQMAAEVANRRFIENLKMGKNFSYGYKGTVEQTLSLGIMGASAELAFAKATNTYFNGSYSDQYSRYTDNDMQKGIEIRSQKRKDYNFLLIRPGEKKARYVLVIDEGNFEFSLIGWFPFINDMPQRLTNFGHINRPPAYKVDIKELYPIADLKT |
Ga0209710_10167697 | F017161 | N/A | MQKVGKPKDWILFKHDPEHEKSIKIDFSGTINLTNGFKGTVLASKGVSKNGNTKFLRLFKQTGVLFLGDEGKFTGDMTDVEIGGKKALIGWSNDKSETPHISGYANEPQVKEEVKDDKAP |
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