Scaffold Ga0209710_1014349

Overview

Basic Information

• Taxon OID: 3300027687
• Scaffold ID: Ga0209710_1014349
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4356
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Cryomorphaceae → unclassified Cryomorphaceae → Cryomorphaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025595	Metagenome / Metatranscriptome	201	N
F037809	Metagenome	167	Y
F071648	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209710_10143491	F025595	N/A	STGTRINQGGGVMTIDINGLSTKFDILTSIKENIQDGDTDTAIDMINQMIESEPQPEEARPVADALDHHQIMQKGIVR
Ga0209710_101434911	F037809	N/A	KISNAININKGSNTMIKKLLLGLALITLVACSTPAEANDVADDGKCLDDIKHYNHLVKTTGADDSDKASAIVERDKGAEQWAQGNKEACETAYQAAWALID
Ga0209710_10143494	F071648	AGGAGG	VKKSIFRCTVCGKKFTHQKPDTLVGKLGIIPVNLCKKHFTAVMKHDELMLNDYRKVA