Scaffold Ga0209710_1014054

Overview

Basic Information

• Taxon OID: 3300027687
• Scaffold ID: Ga0209710_1014054
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4414
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010277	Metagenome	306	Y
F024420	Metagenome	206	N
F050005	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209710_10140544	F010277	AGGAGG	MSNALKDKLLEVEMFVGDKLADYTNDQVLEKVRKEFGLQMYVDHAEDLLHEFQQEIRAEKTVNWSY
Ga0209710_10140545	F024420	GGAGG	MTIYEELRKIINKNACWQEEGRKFELLWNLILSSDKRSFSEYFEEEHNIKLYDAMTFKEILTLCRDYNVGGKFK
Ga0209710_10140546	F050005	AGGAGG	MKNKTNYPLFHEFKIMKIGNVLFNTSVDDIIEQEIEETTIIINQLKDINQFLEV