Scaffold Ga0209710_1010253

Overview

Basic Information

• Taxon OID: 3300027687
• Scaffold ID: Ga0209710_1010253
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5380
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022460	Metagenome / Metatranscriptome	214	Y
F048317	Metagenome / Metatranscriptome	148	Y
F054045	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209710_10102533	F048317	N/A	MIRDIYSRDIEAPNFSEDTIEVSDSLSQLIIKIENCLFTRKGDVLGAPDIGANLDELIFSLVLNENTIENKITSQISAYCLPDFSGFDVDVKVTFFSTLERDGCLVDISVNEQRVLGALF
Ga0209710_10102535	F022460	AGGA	MATIKDNRTGFPSLYRATYEEGWELKNTGYDYSKNLLNNTMSAYMFKNPRLKTFLEDYLTPIMVFYINKVKYVRIFYNFAVPKWYQKIN
Ga0209710_10102536	F054045	N/A	VSLWQNLAFFDKEGKNYNMKYDSTTDMWSGDIFLPQVSIDLFEVGQLFILQKMFNKTTQALEYGYPHTTTNNCDWDAEWETETPDKIFLFQFDRNFNDGTQSALTQEPDGPPLVKYTRLTIPIDYDANQTEYTDPITGKSFIATDEIRSIALQVNLAFSSENENTYKRTLEITDKCTNNVIGKFTVYAESIEEDERLRVMTQN