Scaffold Ga0209710_1007780

Overview

Basic Information

• Taxon OID: 3300027687
• Scaffold ID: Ga0209710_1007780
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6379
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (21.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008425	Metagenome / Metatranscriptome	333	Y
F032332	Metagenome	180	Y
F051263	Metagenome / Metatranscriptome	144	Y
F064641	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209710_100778010	F008425	AGG	MASKDITYKQFIAHMDKGNKVYMKKPKSWQKVWFWWESKRDKWFLNKAYDKREDGQVIIEPSVFITAKQMESHMNYMERQGYKYNIDE
Ga0209710_100778013	F051263	N/A	MSITNFESFGLNEAEKHEFNPNETAERLKRRETQNIERFRAAQEREDNYGIEYYKYRIAIDKIDLQKLKLMTQIHQLKKKNKK
Ga0209710_100778014	F064641	N/A	MDQKEESQSRKDQNTIRHFKGTVGQFKQMFDDLADGKDTNAYNSPVRQGYDVFPTRDKNTKSPHWDDNHEDEKTQNENHISKFDIFESRK
Ga0209710_10077807	F032332	N/A	MEKGNGFGNDFIRSLLLTLEQTDHKQFMDLSYHVLMQSPSSVLKRTDAIENKIKSIDSLIKYFESIEEYEKCTNLQKLQSMLYLNTSFNDNDIQKPD