Scaffold Ga0209710_1007363

Overview

Basic Information

• Taxon OID: 3300027687
• Scaffold ID: Ga0209710_1007363
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6595
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011932	Metagenome / Metatranscriptome	285	N
F014251	Metagenome	264	Y
F026436	Metagenome / Metatranscriptome	198	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209710_10073632	F011932	N/A	MRILEFTSRSDKPSAQQLTALAQYLLGRSEDTDNNYTVPIDVFLSMAHNMGVNITDEQLRTLVMQPPLSNIISNVSGDEIVLVGAGVTGEEGEDTMTVDQAQDTVAGMADSANELT
Ga0209710_10073635	F014251	AGGA	MVSGNLRSRVTDKASRLLNKIADELLNSNPNAIFRNGDSIIAFADYEIVKESANEYSIYKDNYLVETCSSCRIALSYCILDKNEMQLDAKHLVALEDKLLGRQTEMMHYRHVITSPNTDEFRREVVITRLDTAKHEYHMIQKQLTKSINVAKYCQQKGFDNEII
Ga0209710_10073638	F026436	N/A	MQKTQWIYESPDKGDTVYRRRFGSLQKELVFKKPDPHSISAHVAEIVSESPNDPAIKDMLDKLMVYWSLKNAKN