Scaffold Ga0209710_1007285

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209710_1007285

Scaffold Ga0209710_1007285

Overview

Basic Information
Taxon OID	3300027687 Open in IMG/M
Scaffold ID	Ga0209710_1007285 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6628
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (72.73%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	75.235	Long. (^o)	-150.0691	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011932	Metagenome / Metatranscriptome	285	N
F014251	Metagenome	264	Y
F026436	Metagenome / Metatranscriptome	198	N
F044190	Metagenome / Metatranscriptome	155	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209710_100728511	F044190	N/A	LMTHNGIEYKISRHLDDNDIHRGEWDIYSKGVSAFTGDDWQWVDTVTARWNAIARVKGLSENKQKPKIAFDWITESRAYRTPRQLNKLTQKAVGEQLFEQLLALQIFVDSDPAYAARIAEEIMKLQNWPGFRTSQPDLYNLIAIAMKPEKFKDRIKQDVKIAIPELRLKRNLRSIMKGQFNNSDYSYMMLILQRQMDEFLPAPLIQMRRQISNWDRQMPRDKNTIRSRLMLQMRKTGLQNEFYEFLRRTKTFARL
Ga0209710_10072854	F011932	GAG	MRILEFTAKSDKPSAQQLTALAEYLLGRADDEATQHTVPIKVFLSMAHNMGVNITDQQLRTLVTQDPLKNIISNVDADNIILVGAGVTGEEGADTMTVDQAQDTVAGMADSANELT
Ga0209710_10072856	F014251	AGTAGG	MVSDNLRSRVTDKASRLLNKIADELLNSNPNAIFRDGDSIIAFADYEIVKESPNEYSIYRDDHLVETCSSCRIALSFCILDKNEMQLDAKHLVALEDKLLGRQTEMMHYRHVITSPNTDEFHREVVITRLDTAKHEYHMIQKQLTKSINVAKYCQQKGFDNEII
Ga0209710_10072859	F026436	AGG	LWLNIRMQKTQWIYESPDQGDTVYRRRFGSLQKELVFKKPDPHSISAHMAEIVSESPNDPAIKDMLDKLQVYWSLRNANN

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