Basic Information | |
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Taxon OID | 3300027687 Open in IMG/M |
Scaffold ID | Ga0209710_1004831 Open in IMG/M |
Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8652 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (33.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Arctic Ocean: Canada Basin | |||||||
Coordinates | Lat. (o) | 75.235 | Long. (o) | -150.0691 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F026158 | Metagenome | 199 | Y |
F047368 | Metagenome | 150 | N |
F050008 | Metagenome | 146 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209710_10048312 | F050008 | AGG | MSQVNMNETQRELVLDLAEDFAPFVKKVESGMALTRNHYGVYGSMIIRLSKGNRKLALMLSYALMMAGANGQGVSDAMGAFFPE |
Ga0209710_10048316 | F026158 | N/A | MEGFKDKIEMLMKAGDILDHCTRGRSTEKEARKARARSLKIWKDTGCPISQAAELGGANRTNFHKWLIREGHHTPKSK |
Ga0209710_10048317 | F047368 | AGGAG | MPNECGAIKHAHTADEALKYLAVGNKSKGYKLKRSGVSIMVLNIEEIKDT |
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