Scaffold Ga0209710_1003328

Overview

Basic Information

• Taxon OID: 3300027687
• Scaffold ID: Ga0209710_1003328
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10882
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (47.37%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041739	Metagenome	159	N
F089507	Metagenome	109	N
F099984	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209710_100332817	F099984	N/A	MPDALILGCSHAAGALMHEEPGLVLESDGTKDVYQLEAEYGAQRSYPVQLAEMLGYTAHNHAISGGSNDAMYRIYAEQEQHYDLIVACWTGPDRGEIWHSEHEYWVPIDVGNGDSFTKTPNDILKQGRNVLTKLKNFEQYEDYGKQWLTFEGNEQRGFNNKVKNILALNSLAKSKDTRVINLESFAGIHYQFPWPTDIHRPCDGHRNEFCNFCDYRKFPTEPRGHYFFAAHKAYAEYILGRINQLGGFGK
Ga0209710_10033286	F089507	N/A	MCYNVIIIKQQRRELMHLQIKDVSLYTKVTSRLKNGRHYHNFQEEMAGLQLQQFTVQKTAQEHSLQNKETILARATHLGIPTVILHSEGMQFVGQSNITTQQILTDTQIDGLNEGSSHRWNSARWNVIENDEGYQVLDFYTNYDMNLVLNADTGFYVDGVKVKNRYDQINKLWSYGYASKRGRPLRIGRIGHSGTKQEIEHLVRWTDELKSTHTGSEIAAKTISIYSSLNRHYAWPEHW
Ga0209710_10033287	F041739	N/A	MTRELKYNSDRFNLTSADDSCYLDPSDPIHEFMITGNASNLNQPKKQSVTVQAAEHQRKVEIAKAQGIKPGTPAWFML