Scaffold Ga0209710_1002116

Overview

Basic Information

• Taxon OID: 3300027687
• Scaffold ID: Ga0209710_1002116
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14188
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007687	Metagenome / Metatranscriptome	346	Y
F014905	Metagenome	259	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209710_100211610	F007687	AGG	MVNKVKAGKPKSASAKAAMANRGKFESKHTNYGEPVHYKVAAAVVPFSAASAKAAMVWGDTLVESVPPAYALRYRELKGDLDAAMMTDNYTLCAELAASLIKALKMMNEKARVDGFKPPQVDGHIVEWGGKIYCFLASGDLAAVRKARPTWAVYHLSDVCAVLSVRTDEMMAAVVDKFPNAKIVDVRLYDDEIPFGHD
Ga0209710_100211615	F014905	AGG	MKQIPFHKLSPKMKNIRMNNWIKTYIGRGLDLEDAQYAARWRAGHWKLSDRMKKVMDGLEDV