Scaffold Ga0209710_1001421

Overview

Basic Information

• Taxon OID: 3300027687
• Scaffold ID: Ga0209710_1001421
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18452
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (29.03%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052252	Metagenome / Metatranscriptome	143	Y
F083374	Metagenome / Metatranscriptome	113	Y
F098204	Metagenome / Metatranscriptome	104	Y
F098205	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209710_100142111	F083374	N/A	MSLYQKRFKKFLSEQDNENTELTDQEAMASTLEPETSPEDFDVDVPANDEGAISSQSRQMFEELNGWIQKMDEFSNYLNGTSDSIQTSLNSAEGDTIFDSISNAETKKIARVAMEVSSLSEILKGYLAGANDPKYKFN
Ga0209710_100142115	F052252	N/A	MQDQFINPQQIRSPYTGETVRPTYNTYNANGKTYEQAVMSDPVTGHIIKKGLVSIKDAKTGELIQDYKGALSQSMTTQSRG
Ga0209710_100142122	F098205	N/A	MKDWSEHKVKNKIKTAGYFIKRLKDNGFVVLKMFNAYSEADPRRWSILVDPGYHSVFITCFTNKDEKGEVLFEFDDGGNNFKRGFYLKTDSIESVVTQLLEKGINNDPSKNPFSRTK
Ga0209710_10014217	F098204	N/A	MIKKTDDIIQEYGIDFVARFACLYEGVNVACSRAERIGYDTEFSSAWIKPTAFQKYVDERYLDMKYDIQLYLRGIDTDEIYPWKDVY