Scaffold Ga0209710_1000718

Overview

Basic Information

• Taxon OID: 3300027687
• Scaffold ID: Ga0209710_1000718
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28625
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002182	Metagenome / Metatranscriptome	586	Y
F039832	Metagenome	163	N
F076517	Metagenome / Metatranscriptome	118	Y
F101908	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209710_10007181	F002182	AGGA	MIYTDQENEWLSKPAKNKRASNQTADGRPPRGKDYRKHDWAITTTIEVDGVSYVMPVQV
Ga0209710_100071813	F076517	GGAGG	MYNWFKNLIDAYDKMFVIEKPKKPIVYKIGNKKYIRTKRISKRSVGRVKYIKQGEGE
Ga0209710_100071816	F039832	GAG	MERKIIILLTLILIGIGATSCAKPKVNTVPTEMDTIGKLDAISTVLGCMFAPSACQDKKDLGKTEEDK
Ga0209710_10007187	F101908	GGAGG	MDTRDIPHWVVGDKHIYNQLEAWQEIGESKREFRFYFHDHVYDRYDWSREPTQTWDNLVHQRCLQLRQKYRKLSLWYSGGRDSHHVLRSFAKHKIPIDELLLLHWTMNPIRSAEYYDWQLPLANRYKEINPQVKITTVEVGSKQYERYYGWMTPDKKYFVDDGLFQPSDFEWFTVNLCNISDSSTGVIVALEKPYLYLSAGKIYHRFIDKVIREYRGSISEFEMFYYAPEMPELYIKQCHILAKYMKQNYPNKDQGFFDEFIENPHGHYYSEFNTACGRGPAINEDVPANNGKNKYTGAHTLFDGLIDLAKKENFQSLKVWEDYSSHWTNKTPQAFEKNYRTGATGIRSNPKFIMDYAQ