Scaffold Ga0209710_1000395

Overview

Basic Information

• Taxon OID: 3300027687
• Scaffold ID: Ga0209710_1000395
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42302
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (83.05%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003976	Metagenome / Metatranscriptome	459	Y
F010571	Metagenome	302	Y
F010878	Metagenome / Metatranscriptome	298	Y
F022084	Metagenome	216	Y
F094102	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209710_100039515	F022084	GGAGG	MEHTEYLKRLFNHIESKGYTIECECEGEDITKDDALTQVDEAVIYIIDKDGHSLGWIHWTYWNDWDESISDYTLELEKILELDKFIDGIMKEVA
Ga0209710_100039517	F010571	AGGAGG	MSNATMQTYIDKLYEELYEKYYEEVGKTTDDVEYIEKEAERLAEIDLDNLEMEG
Ga0209710_100039519	F003976	AGGAGG	MSRTYNDYYFEKLDILDTLDKLEMSVRFLNVWVKEPMGLENAKYILEKNANRKFNWFDMDMIKDIVNTEGGV
Ga0209710_100039521	F010878	AGGAG	MKITAWNIGIVWEDGTEENIGDVPDWVANRVDEFLNELEEVDDD
Ga0209710_100039526	F094102	AGG	MIDGFLTPMNKEEYKVWEDWIMEYNHNNPKDPIAYEVKWNEDNYKVKLLNSRVDTEGK