NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209710_1000197

Scaffold Ga0209710_1000197


Overview

Basic Information
Taxon OID3300027687 Open in IMG/M
Scaffold IDGa0209710_1000197 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)66540
Total Scaffold Genes82 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (7.32%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000352Metagenome / Metatranscriptome1247Y
F037813Metagenome / Metatranscriptome167Y
F097368Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0209710_100019759F097368N/AMNYIKNQILRDEMYSDLIQDYDTSNMSEQELSNTHDKIITIINNKL
Ga0209710_100019768F000352N/AMPNIKLTKSDCTFVHYVLRMYAQQTPGMDAEDKAEIRDVANKFKL
Ga0209710_100019772F037813N/AMQKLNLYDRLKPEYKTSIDKQYNKDNRKFQHEALIRALSSEYYFTEVRYGDAFDIMNSCNLDFLGDAFNKQEL

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