Scaffold Ga0209626_1019340

Overview

Basic Information

• Taxon OID: 3300027684
• Scaffold ID: Ga0209626_1019340
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1615
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015004	Metagenome / Metatranscriptome	258	Y
F020232	Metagenome / Metatranscriptome	225	Y
F045388	Metagenome / Metatranscriptome	153	N
F066033	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209626_10193401	F066033	GGCGG	MITQSRAVLQRILQRRTNWAPAGESFGCPRCHAKYAVIRRQTPPGMIPACEDCDQEFPPTQDGEWLLYERADG
Ga0209626_10193402	F045388	GAGG	VRSSELTDDDLWRVIADNTDAMSVLIEKQFELDADAGTPDPDSRQKLMLFNVQAIDNYNRQYRDCIAEIRRRYPSI
Ga0209626_10193403	F020232	GGAGG	MAEPSAEPIPPDFAEAFAYAVLVYEIWTPAEPGRLIQIGPRSYSIVEVCRFVDQFTDRLPERVYLKLRSYMHDYPDAKLKADLAADPTYATAVRCLRGMIERRTEDFKQRGGTAG
Ga0209626_10193404	F015004	N/A	AGYALCVVAGLAAVALNELRIAADVAQGSPGMVAFGDMILFVLVAGFFGLVPTWFLLKLLIEKAPRTLVAIELLAAAMGPASWLSLTHLAGSASLPNLPEAIRTPIVLFIAFVAVPRLVLGPVLLVIEAVTFLLIRGRVTRALLVVAMLMDLVPLGMFALHMLRATRY