Scaffold Ga0209392_1000013

Overview

Basic Information

• Taxon OID: 3300027683
• Scaffold ID: Ga0209392_1000013
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36482
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (32.69%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005050	Metagenome / Metatranscriptome	413	Y
F008936	Metagenome	325	Y
F024730	Metagenome / Metatranscriptome	204	Y
F030677	Metagenome	184	Y
F061575	Metagenome	131	Y
F080936	Metagenome	114	Y
F094990	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209392_100001326	F094990	N/A	MNSIAKITIPIEKLYQTINSAEVLSAQQIIERNSYEGVAYPIDNVMHYAAASNAIAEVNKAIKAIQDARKMVTGPLDAYKKELMRIESDATMPLQSFIASTKTAMLEYNAACEKQFAAEQEKATTLESLVDNTAEVSIQHSHIKGIRTIRRTRINGEVDWMKVLSVLFGSGMYKPEDLTQNLLKAMEKCGVDSIAGIEIYEEKIQTITR
Ga0209392_100001330	F080936	GGA	MYLDSLNSEYTVRIAKDSAKIYSQAVKLAESGTKLRALQLREPEVVVRYQTRTKIKTELQLGETVYIDSFPHLRLPRSFSREGKFLQIGGSINRLGRLQIDSIIIPVSYTVAIGDTLRKGLFSRKRDKVVRLGIDNPYVSITGMHNVIVADKPKKWYQTQVAGAVFGGLVGFAICRAK
Ga0209392_100001339	F030677	N/A	MPTPAEIQKNLDILYEGWTSKFTPLYVAVRELKRIMFKRIFGTGSSGGTNTAGEKLPTKPYSTKPIYVSPRALASAPSKYKVGKRGEPIESLYFQGGYAELKKGTSRKLPLELTGKLKGGFLSEEVITEGLEAAIALPGSETGKVDGLEAKYGIIFLPTKEEQEAMLEEHAQLLVEQIINAMNKS
Ga0209392_100001340	F024730	N/A	MCIESLLGLRGCESPEPSTGLYIDDLGINQTFLGQLITDQYNNGVELFEDKRAFAWRKISSDVLTKLSPMMKSDTVIENKRVGQVVSNYSNVQTALGAGNYGGIRLKIDPNTVSYLNFYLADINLAIASSNVNVPVLIFDMTTGKLIQSLTYAEGALDQFIGKTLTSAKRKLDIAIVYESTMNTVKFTPKRGTCTSCGGGPRESHICPFVDAIGIELTTDGTNVLTSSSSRYTTGMSLTYSINCDRQGWMCSIGGLMALPLAYATAVEIYNYALTVSPNQRVNTTVIVNRGQNKAELMDGIMAARDIAATRYGEELGAMLQNMRLPDDTHCWDCKRNMKYVTALP
Ga0209392_100001346	F008936	AGGAG	MASFDSLVRDKIALFESVPEKLATAAQKTQAEIWRKIRPILEDMDVTAAGNIEQTEGNIRRIALISDELKKVLAGGEYREAVRAFLGSIDEGVQLTNEIARTFESAFEPTEVQKQLLQISKQNAINTFFGAGLDARFTQPFLEQLTTNIAARSPLRETVAALEGIVTGTEANDGRLLANIKTTATTAQAVADRSYSAAVNDELGIEWFEYLGGEIPTTRPFCEHREGEIFHRKEIEAWGDGKNSGGIRDIRDGTWAGRIDGTDSKSIFTLVGGWNCRHYLVPVPDRKVPETVKARARAEGFI
Ga0209392_100001351	F005050	N/A	MACVSYCDSSLLDHNLVNCNEYKLGGVSAIIVGACGTELVNPEDEAALEALLLNGTAKLIEDIRFALPAGSPVTVDSPIGCGTPIRINEDRTATLFDANVTDENNTFWNDVNNRRIAWILAYMCDSGKVIYIDPPQGLTTSANFILPEQNNELQRYEVTFSWRDKNIPTQYEAPAGIFG
Ga0209392_10000138	F061575	N/A	MSVCSPCFDSGISVAACNAGIAFGVVPAESNYVVRITHNATKKVQQFNVASDVDGIITIIGAKIDAMQGYTIALQGCEKFTICEVEYDCISFSVVNMDVDEPETINLLECVSC