Scaffold Ga0208991_1012806

Overview

Basic Information

• Taxon OID: 3300027681
• Scaffold ID: Ga0208991_1012806
• Source Dataset Name: Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2513
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: El Dorado National Forest, Georgetown, California, USA
• Coordinates
  • Lat. (^o): 38.88
  • Long. (^o): -120.64

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003832	Metagenome / Metatranscriptome	466	Y
F005268	Metagenome / Metatranscriptome	406	Y
F014888	Metagenome / Metatranscriptome	259	Y
F025325	Metagenome / Metatranscriptome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208991_10128061	F025325	AGGAGG	MLSDSPKRLKKTWEELTAAASMETDPEKLGTILEEILAALEERQRTLSKLSS
Ga0208991_10128062	F005268	AGGAG	VSQSDEETEEQKVWRVLSEAGLVEIGLDEFAERIGDVKRIVIVRLRELLDFNTGIKERDSAAYSLGTLTGLELKVLANAPKPPDPSEM
Ga0208991_10128063	F003832	N/A	MKSTAKQLRSEANWPPEEGQIISFRSSSGSETTVLREVRWGLVWRDFILEDGRVIPEHRISGCPHPQVWRKIDEVSDSEREDCEERLLSMAGAGMDPRQRDQPFWAELNQYLAYTYLRYKQAERKVEDTER
Ga0208991_10128065	F014888	AGGAG	MNKVLEVLLTVIALAGLYSAIQTNISPPGNSAVRAEQAVVIADGSDPMPLCRTKACRPTQ