NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207826_1050229

Scaffold Ga0207826_1050229


Overview

Basic Information
Taxon OID3300027680 Open in IMG/M
Scaffold IDGa0207826_1050229 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1156
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NameLuquillo Experimental Forest Soil, Puerto Rico
CoordinatesLat. (o)18.0Long. (o)-65.0Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013790Metagenome / Metatranscriptome268Y
F024635Metagenome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0207826_10502293F013790GGAGMRTNRTSDEWADWCIAKNRIAEELKEYYQACTTGQLPPQLLTLSKKLDEELLKKQERSAV
Ga0207826_10502294F024635N/AALNNFNEQVREFYRQAVDCARQADAQNDPKVKQQFLELKRLWLLLAQRCEFNKA

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