Scaffold Ga0209769_1238359

Overview

Basic Information

• Taxon OID: 3300027679
• Scaffold ID: Ga0209769_1238359
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 556
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026510	Metagenome / Metatranscriptome	197	N
F037634	Metagenome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209769_12383591	F037634	N/A	VDKDELKQVQLAIHDLIQKEQYDVAMPLINEVLMIYPNDAATLNFLGYIWLMGDKPAFAYQYFRRALQEQPGNKALWTSLGRACHEMDMFE
Ga0209769_12383592	F026510	N/A	VSQYFDYDPAKDTYYLTSTQDLSGMLDKIKQARDNPEIWNKGVQEEWAHFASIPPVVEMQLKQKGIDMYNPHQTKELIKEINENYPYLKLTTKRG