Scaffold Ga0209769_1043995

Overview

Basic Information

• Taxon OID: 3300027679
• Scaffold ID: Ga0209769_1043995
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1519
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012670	Metagenome / Metatranscriptome	278	Y
F017628	Metagenome / Metatranscriptome	239	Y
F040590	Metagenome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209769_10439951	F017628	AGG	MATYDIAALKEDLPTAKDLAQFVYDKTSIALDLVGKPKEEQYQVAKNALEGKKIPTEFQTDLNPYIDRKELIPADEKRILPPRSKDLPDEGSQVHFFGATNMPHPSDPQSDKKVQINFRKYDNGVITFQVMGP
Ga0209769_10439952	F040590	GGCGG	MTNGLTKNINNKLKGFEEGHKRGQTLATAVGKAFNQNPLSDNHLNNINVAAAKKFTTPKLPKSV
Ga0209769_10439954	F012670	AGG	MKIPKDANILFGEIRPEGSLVTSPEELAKKKIYFKMKRAEKRAMGLATGEQFPKEEKPQVQRGRQKSIVNRVTEYGALFNKLNEERLAKGLPPLKTAMEVLIDAMQSDEIDIKDKARIADKLAPFESSRAPIISIEHVNNVNREEEVSADDALDDFLTALRKV