Scaffold Ga0209769_1000415

Overview

Basic Information

• Taxon OID: 3300027679
• Scaffold ID: Ga0209769_1000415
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16974
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (72.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059770	Metagenome / Metatranscriptome	133	Y
F098903	Metagenome / Metatranscriptome	103	N
F104718	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209769_100041513	F104718	GGTGG	MSEPMQKEIDAVVALMAPPPNSTGLLTARDVQDIVRRAASKGALIGWLAAEKDVHARMSRTLGQLEYENQCNKDRVKELELEVMGLQQ
Ga0209769_100041525	F059770	N/A	DELKQMRPYIESWGKQLGCSRVSLAGRQGWQKTFLKDEGYEPKWFILSKELS
Ga0209769_10004154	F098903	AGGA	MVTKKRGLVVKVEQPSFPTDPFKVKLNSLLLSVSNRNKDHTAVWGTDRLINLVDAELRTKFWNQMERVWLAQENRDEERLEKAVKGMIAGYDALERYAVANGIDPMPDIAAIEHEMTDGSVMVIVKTKADALLYSQFRPEVQGQHIWNMEEIETMMAGAVMREVIKIKQLDAGATMVKVGGDSGFDDMESDLDFSKPSTLPKKFNTELAEAGRNASI