Scaffold Ga0209011

Basic Information
Taxon OID	3300027678 Open in IMG/M
Scaffold ID	Ga0209011_1002969 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027678 Open in IMG/M

Scaffold ID

Ga0209011_1002969 Open in IMG/M

Source Dataset Name

Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5963
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (70.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

5963

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (70.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Thunder Bay, Ontario, Canada
Coordinates	Lat. (^o)	49.08	Long. (^o)	-89.38	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Thunder Bay, Ontario, Canada

Coordinates

Lat. (^o)

49.08

Long. (^o)

-89.38

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004003	Metagenome	457	Y
F004186	Metagenome	449	Y
F004349	Metagenome / Metatranscriptome	442	Y
F006952	Metagenome	361	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209011_10029692	F004186	AGG	VESRRTLLFLAVAVLTAGCGVPTPAAPPSAREVLAKPQQSNLTDAHFVVTGKITNNGVTVALLGDGALVYKPKPAGRFKFQTTVGGQTLTVGEISLDGTNYGLTPASNQWVAQQSTTGIDPTAFAGASNQKYIGEETLPQGKAWHASATDKDGFAFDGWIRESDGYPIKYVETQTGGQNITLSFDKYNTGEIIKAPPADQIQTG
Ga0209011_10029693	F004003	AGG	VAAIAAAALLAGCGGPGSPLGPPKPEDILAKPVHTGSLKDAHFLVSGKFTDNGKTVALAGDGALVYTSGSGRFKFQTTVAGQQVSFEDISVNGTDYSMTIPGSGKWVARASASALGPNSFAGASDFKYVGEETLPQGKAWHASAKDKDGNPFNAWIRESDGYPLRYVITQQGNTLTLTFDKYNTGQTIAPPPASQVIKG
Ga0209011_10029694	F004349	AGGA	VKTKPRATLAVAVLMLAACGPAANQAAKLPTASEILNKPDQANVKDAHFTLVAHIVSSGVAFDATGDGVIVVKPAQASKFMMTTTIAGQSLKFEEIIIGGKEYDLAPDNPRWTVKASTSSNPSSFKGTDAVYLGEDTLTLGKAWHVKAKDANGSPFEAWVRESDGYPLKYASLTQGSTFTATFDRFNTGQQVTAPPPSDVQS
Ga0209011_10029695	F006952	GGAGG	VIGPLGTANHEIREAARRGQERRRARLTEPRRLTDELLSRLEELNLDGVPIVPVSYDPGLAEIRSHLVGRPGIGTRLLERLQSGTRTAELIETVFTIQEVIAPPTLPAGAVIFEEPDLV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209011_1002969

Overview

Ecosystem & Geography

Associated Families

Sequences