Scaffold Ga0209011_1000447

Overview

Basic Information

• Taxon OID: 3300027678
• Scaffold ID: Ga0209011_1000447
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15841
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001619	Metagenome / Metatranscriptome	662	Y
F005004	Metagenome / Metatranscriptome	415	Y
F014492	Metagenome	262	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209011_100044720	F005004	N/A	PDFRPRLAEWVADFALAGQAALDGPDWASRMVMFRLYYLGLAPYENARHFLGLSEQSWVNWSEEVRRRCGKELLRRGMFPPRKYFRGD
Ga0209011_10004477	F001619	N/A	MRDFLLRLLQGRYVGLLEGEVSRLRAENRALTNSLLGTAGFPPVEYPEPAKPQPLPRLRKRSWHQIQAWREAGAARDSEMHLDGREEARTNGPVPHR
Ga0209011_10004479	F014492	GGA	MNSWNASQSVLEKLTQTVYLDRVLKVAGVAGFIVTYLNAWRSMHLGLKVGFVCSAAAWFVGARFSKIYR