Scaffold Ga0209011

Basic Information
Taxon OID	3300027678 Open in IMG/M
Scaffold ID	Ga0209011_1000002 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027678 Open in IMG/M

Scaffold ID

Ga0209011_1000002 Open in IMG/M

Source Dataset Name

Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	399544
Total Scaffold Genes	339 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	268 (79.06%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

399544

Total Scaffold Genes

339 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

268 (79.06%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Thunder Bay, Ontario, Canada
Coordinates	Lat. (^o)	49.08	Long. (^o)	-89.38	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Thunder Bay, Ontario, Canada

Coordinates

Lat. (^o)

49.08

Long. (^o)

-89.38

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000806	Metagenome / Metatranscriptome	883	Y
F008794	Metagenome / Metatranscriptome	328	Y
F008840	Metagenome / Metatranscriptome	327	Y
F012518	Metagenome / Metatranscriptome	280	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209011_1000002132	F000806	AGGAG	MLKKRLTLLFALVLTFPLAAAVFGQKAPAKSKEARWEGRVERSSKEQSTLTIRKSGSSVEKTCAFDSSTKWVSQYHADKKVNDIDASQVKDGDYVICKGTYDKPGVLHATLISKRLSHSA
Ga0209011_1000002291	F008794	N/A	MSTTSTPIAPPQETTVARLRNFALGALLALVLLLPKLLNIRRDRRSWLAFRILLAIAGASLVTLPLSLWNSWHAAIAGLAMFLAAILLPAAKPDTTLADTAARLGALVIVNGGSYQVENGQLEYGQLEYGQLENGQLENGPPSAVQLFVCTERIWALDFHQHPLLVIPTAQISSATAAESAGDWIVRIRWADHTADFHYRGIFAEHLARVAESTLRSIIHPPLPVLPQKRAATA
Ga0209011_1000002307	F008840	N/A	MRSPTPILFACLLAACGGISLAQDAPPAQVLQSEVEEQRALLERVIANQKKNDLAMFTYERLERLEIQKGAAGSQPLEIKTTRAVPAGTGIDRIPVGPDGKPVDAAAYRAELMKLERALSWAAEDGRAQREAYEKIAKKQKERSDLIDATRTAFLYTFVAREPRGDRMLSKYRLVPNPAYKPTSRTTSIFAKVRGYLWIDEDAAQLARLEIEVTDDISFGGFLAKVYKGSHLIQERYEMVPGLWFATYAQYDFEGRRLFVSFAIHERTSYSQYRRIGPPKEALEAIRAELGKSTSANADP
Ga0209011_10000027	F012518	GAGG	MFAAMLFAISIVALSQFAAYYWRAMLAGAAAQPVSDRILAAAGVENGQLSGQDFPALLGLHDLTPELRSGGNGLGLVRLYYALVDGIASQVGRSMPAVAAWSERELAVCARYAAVQIDRRLQANLELAAALRSC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209011_1000002

Overview

Ecosystem & Geography

Associated Families

Sequences