Scaffold Ga0209019_1046936

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209019_1046936

Scaffold Ga0209019_1046936

Overview

Basic Information
Taxon OID	3300027677 Open in IMG/M
Scaffold ID	Ga0209019_1046936 Open in IMG/M
Source Dataset Name	Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_300m (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1373
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	8.0	Long. (^o)	-156.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F043074	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209019_10469363	F000245	AGAAG	MKTFKEYNYQQKLDKYVSDEIKKRKLARHPVNATDDYKMKKGKPAFKFPSPTGEMMIHVWLRPMAKPASKDTKAFNYQLEDK
Ga0209019_10469366	F043074	AGGA	MLRFKHYLKEVNPKYIVAKNPSDKKWYAMGHVGSNKWM

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