Scaffold Ga0209019

Basic Information
Taxon OID	3300027677 Open in IMG/M
Scaffold ID	Ga0209019_1000802 Open in IMG/M
Source Dataset Name	Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_300m (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027677 Open in IMG/M

Scaffold ID

Ga0209019_1000802 Open in IMG/M

Source Dataset Name

Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_300m (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15890
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (75.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

15890

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

24 (75.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	8.0	Long. (^o)	-156.0	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

8.0

Long. (^o)

-156.0

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003827	Metagenome / Metatranscriptome	466	Y
F005883	Metagenome / Metatranscriptome	387	Y
F017842	Metagenome / Metatranscriptome	238	Y
F019664	Metagenome / Metatranscriptome	228	Y
F041261	Metagenome	160	Y
F051978	Metagenome / Metatranscriptome	143	Y
F076182	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209019_100080215	F003827	AGAAG	MAEGRWADWQVRQIAENMAEKCPKRDWFDGDDENYLTSLKSWSHITARNLFSMELEERQLIIFIHHLGIEHVGVQTFDPQDTRQHSDFVPHEGRHDYNSPPLDIQPK
Ga0209019_100080218	F017842	GGA	MPTYVMKDPDGMEHEFICSISAMEKKKTEGWTTVFSPAKNNLIGHTGDVISHTSQGWKDVLRNIKSNVPGSNIDTG
Ga0209019_10008022	F051978	GAGG	MEYIIYSSLILITLICLWVLISIPKNYLFKSLLVPIMIVVAVSTWYTYNAILGYGTEFKPVKEVVYHSHVADKRNGVIYILLTEFGDVEPRLHIYPWSEDLEKQMQGADGQQQQGIMVVGNFKRKDDPSGTRPLPDDEEWQFYMMPPNEYMPKE
Ga0209019_100080222	F019664	N/A	VKGTDDGKTIDGQDAGAIPATSTNSREMYQGIFRFAKAMNTYYYTPSEWSRSIGWGKVPDKRNTELRGVKQDRLTDENLQEDSDTKT
Ga0209019_100080226	F005883	N/A	MLEQITTFGKQGMVYRRGHQIVLENERTGEHVAVKVVQYDSMQGWLAENGEGDWQWYHEKDNQNWPEDTEFWKYIKKVGT
Ga0209019_10008023	F041261	AGG	MKIHDCPCDSCKSRVKCGREATECKAVRQYYDRGWYNTDFVGVKLKLMKGYKKGHYIV
Ga0209019_100080232	F076182	AGGAG	MKKFLIALMLMIPMSAYALDVDFVSDVTVASHGVSIGLDQDGNAFSVGAGGLTVSTSDTSQIGVEYASTIWGVTGSASYDYTSDDEHALGFDTSTTLWGIELDAGIDWNIDDASFDGTLGTGYSMFGLDGSATTNWDIDDFAYEGMDVTAGYTWAVTDSFSVRPNLTIPFDDDFGRGDLTAGVSISLSFGSNSSE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209019_1000802

Overview

Ecosystem & Geography

Associated Families

Sequences