Scaffold Ga0209077_1000013

Overview

Basic Information

• Taxon OID: 3300027675
• Scaffold ID: Ga0209077_1000013
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46754
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (82.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025043	Metagenome / Metatranscriptome	203	Y
F026598	Metagenome	197	Y
F096805	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209077_100001310	F026598	GAGG	MPVISFSEADMSRGKIVEPAWYVMTINSIGDGIPSKDGGSTNYNVEGVIVRNADTGDETFKGTTLQWNFNSKALGFAKGFLESFGVGVELNKRYELKSAEGKQLDVFVENDQWQGRVVNRINHKYRPLRTA
Ga0209077_100001346	F025043	AGGAG	MSQVGEFPGLQQNAHRRTIRAPINPMDKSTIVSILPKHISERKPTIQPGLFELAPGRPDAPSLLVVGTSSWWREIDENQPLLEIPVSSIQVADSIVKDYCNGLLACNMEDQMPGIFYIPGEYTVDQLKKEHPAVLAQNIARQKKWYLALVTMADILWSRSNGNPLSISEDARMACRELNITGKPWLSDIQMAELVRCVACGSLRNSQFPICQTCKAIADPELAKKLNLSFAQ
Ga0209077_100001350	F096805	AGGAG	MPKGAALSEVSSGESISHFASIRIRVTGSSGAQLRMTVYSLDDVKSKDLVPFTLAPQARIIPTRIVNFMEQRASFEIRTTGMNEKFRINRIVIFSKEVFSSYPGS