Scaffold Ga0209118_1006419

Overview

Basic Information

• Taxon OID: 3300027674
• Scaffold ID: Ga0209118_1006419
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4335
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000528	Metagenome / Metatranscriptome	1047	Y
F026941	Metagenome	196	Y
F072160	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209118_10064191	F026941	N/A	RVDEPTDMKGNPTTDERGSGTMKADAYAEIFLWNQNVDRLVRVLQRLESFSIRPKQELKAHEVRLEEIRAGLNADFTQAMAIRERADETRLRLQRAAWEKKNSSGEMPS
Ga0209118_10064193	F000528	GAGG	MGEWKAQVSFRVRQAFRDELAAFAAQEKRTLGNLGELILEWGFEQLKAVGSTHRLLKCKIQVAARQPKGP
Ga0209118_10064197	F072160	GGA	MILREVIPILIACSCLSPVAAAQKVFPSPSTIPPSSTVEHTQDFGEIVVPITSVRLTPSVKLGISGKFSPKLDLDAIFGTGFCLDATC